Free resource

Freight invoice audit checklist

A load-by-load checklist for auditing carrier invoices before payment. Nineteen core checks that apply to every invoice, plus a set built for your freight: LTL, reefer and cold chain, heavy freight, tanker and bulk, cross-border, or drayage and intermodal. Seven printable versions and an Excel findings log that totals what you recover.

What is included

Choose your freight type

Universal

19 checks

Every carrier invoice, any mode. The 12 core checks plus seven fraud, netting and recovery checks.

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LTL

26 checks

Class and weight verification, reweigh and inspection certificates, accessorials that only exist in LTL.

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Reefer and cold chain

26 checks

Temperature records, fuel for reefer units, and the claims exposure that comes with a broken cold chain.

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Heavy freight

26 checks

Permits, escorts, route surveys, and equipment charges that only apply above legal weight.

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Tanker and bulk

26 checks

Tank wash receipts, demurrage on the trailer, product-specific handling and dedicated equipment minimums.

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Cross-border, US and Canada

27 checks

Customs holds, who carries the detention, GST and HST treatment, and currency on the invoice.

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Drayage and intermodal

29 checks

Chassis rental against actual dates, per diem, pre-pull authorization, and terminal congestion charges.

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Then log what you find

A checklist tells you what to look for. The findings log tells you what it is worth and which carriers to escalate. One row per exception: load, carrier, which check failed, invoiced amount, correct amount, and whether it is rebillable to the shipper. It totals recovery by month and by check, so you learn which of the 19 checks actually pays on your freight.

It also applies one rule automatically: two or more unrecovered exceptions from the same carrier triggers a full audit of that carrier. That is the difference between catching errors and fixing the source of them.

Findings log (Excel)

No email required. Print the checklist for the desk, keep the log in the shared drive.

What to check before paying a carrier invoice

Run these in order. The early checks are the fastest and catch the most money, so a partial audit done in sequence still beats a thorough audit done at random.

The universal 12-point checklist

  1. Duplicate check: invoice number and load number against payment history.
  2. Math: line items sum to the total. Watch hand-keyed invoices.
  3. Match line-haul to the rate confirmation, not to the invoice. Use the amended rate con if one was issued.
  4. Verify the fuel surcharge: correct base, correct percentage, correct week.
  5. Detention: arrival and departure times documented, free time correct, rate per the rate con.
  6. Layover: authorized in writing and billed at the agreed rate.
  7. Lumper: receipt attached, amount matches, not also billed to the shipper.
  8. TONU: only where the rate con allows it, at the stated amount.
  9. Extra stops: count and rate match the rate confirmation.
  10. Remit-to: matches the carrier packet or a verified factoring NOA.
  11. Quick pay: discount actually applied when quick-pay terms are taken.
  12. Signed POD attached before approval. It protects you on rebills.

Seven fraud, netting and recovery checks

These are the checks that catch what a rate-versus-invoice comparison cannot: identity fraud, money already advanced, balances owed back to you, and charges you should be rebilling rather than absorbing.

  1. Carrier identity: the MC or DOT on the invoice matches the carrier on the rate confirmation.
  2. Advances deducted: a Comchek, fuel advance or cash advance taken mid-load comes off the invoice.
  3. Netting: open cargo claims, prior overpayments, chargebacks and prior short-pays applied.
  4. Billing window: the invoice arrived inside the deadline in your broker-carrier agreement.
  5. Remit-to changes verified by outbound call to a known number, never by replying to the request.
  6. Approval authority: whoever authorized the accessorial was allowed to authorize it.
  7. Rebillable accessorials flagged for recovery from the shipper, not just paid.

A checklist audits one invoice at a time. Past roughly 1,000 loads a month, invoices start getting approved under deadline pressure, and the 1-3% overpayment the checklist exists to catch slips through. That is the point where a dedicated audit desk pays for itself. ClearLane runs these checks on every load before payment as a managed carrier invoice audit service, or request a demo to see the process. Not sure the money is real? Estimate your exposure with the AP overpayment calculator.

Extra checks by freight type

Every version starts with the same 19 core checks. These are the additional checks that only apply to that kind of freight, and they are where the mode-specific money hides.

LTL freight invoice audit checklist

LTL

7 extra checks. Open the list
  1. Freight class and NMFC match the BOL and the quote.
  2. Reweigh and reclass fees: certificate attached, weight plausible for the commodity.
  3. Discount percentage matches the pricing agreement.
  4. Accessorials priced from the carrier rules tariff: liftgate, residential, limited access.
  5. Minimum charge floors applied correctly.
  6. Absolute minimum charge and deficit weight rating checked on light shipments.
  7. Density-based pricing: dimensions on the invoice match the dimensions on the BOL.

Reefer and cold chain invoice audit checklist

Reefer and cold chain

7 extra checks. Open the list
  1. Temperature-related charges tie back to the temp log, not just an invoice line.
  2. Reefer fuel and idle claims documented for layover and detention.
  3. Pre-cool and washout charges authorized on the rate confirmation.
  4. Product cut or rejection deductions reconciled before payment, not after.
  5. Reefer breakdown and repair costs sit with the carrier unless the rate con says otherwise.
  6. Multi-temp compartment charges match the configuration actually ordered.
  7. Detention at cold storage measured from the appointment, per the facility's rules.

Heavy freight invoice audit checklist

Heavy freight and oversize

7 extra checks. Open the list
  1. Permit costs passed through at cost, receipts attached.
  2. Escort and pilot car charges match quoted rates and actual miles.
  3. Multi-axle or specialized equipment rates match the quoted configuration.
  4. Tarping and securement charges per the rate confirmation.
  5. Route survey and engineering costs authorized in advance, in writing.
  6. Oversize and overweight fines or citations are not passed through to you.
  7. Standby and crane or rigging time documented with in and out times.

Tanker and bulk invoice audit checklist

Tanker and bulk

7 extra checks. Open the list
  1. Tank wash and cleaning charges: receipt attached, wash type matches the prior product.
  2. Pump, hose and compressor charges authorized on the rate confirmation.
  3. Product retention or heel deductions reconciled against the outturn weight.
  4. Plant demurrage documented with in and out times from the facility.
  5. Dedicated equipment minimums applied only where the contract provides for them.
  6. Loaded and empty mileage split matches the quoted configuration.
  7. Hazmat and placarding charges billed once per load.

Cross-border invoice audit checklist, Canada and United States

Cross-border

8 extra checks. Open the list
  1. Detention caused by a customs hold, and who carries it under the rate confirmation.
  2. PARS and PAPS fees billed once, not once per attempt.
  3. Bonded and in-bond move charges authorized on the rate con.
  4. Currency stated on the invoice, with the FX rate and the date used for conversion.
  5. GST and HST treatment correct, and no tax charged where the move is zero-rated.
  6. Duty and brokerage disbursements passed through at cost, never folded into line-haul.
  7. Border wait time billed per the agreement, with crossing timestamps attached.
  8. Reconsignment or re-manifest charges evidenced when a shipment was refused entry.

Drayage and intermodal invoice audit checklist

Drayage and intermodal

10 extra checks. Open the list
  1. Chassis rental billed against actual out and in dates, not calendar days.
  2. Chassis split charged only where a split actually occurred.
  3. Per diem and demurrage billed as the separate charges they are, not one as the other.
  4. Free days counted from availability, not from vessel discharge.
  5. Terminal storage charges match the terminal own printout.
  6. Pre-pull authorized in advance, and not billed alongside a same-day live unload.
  7. Dry run and dual transaction charges evidenced, with the reason recorded.
  8. Congestion and peak surcharges checked against the published tariff and its effective date.
  9. Triaxle, overweight and reweigh charges match the actual weight ticket.
  10. Port, pier and terminal pass-throughs at cost, receipts attached.

White-glove freight invoice audit checklist

White-glove and final mile

5 extra checks. Open the list
  1. Service level billed (threshold, room of choice, white-glove) matches what was ordered on the rate confirmation
  2. Inside delivery, unpacking, and debris removal charges match the delivery receipt notes
  3. Appointment, wait time, and redelivery charges carry timestamps and the scheduling record
  4. Stair carry and extra-man fees authorized before dispatch, not added after the fact
  5. Damage or refusal deductions reconciled against the signed POD exceptions

Construction equipment freight invoice audit checklist

Construction and heavy equipment

5 extra checks. Open the list
  1. Oversize and overweight permits billed match the permits actually pulled and the route states
  2. Escort and pilot car charges tie to the states and miles that require them
  3. Tarping, chaining, and securement fees match the load spec on the rate confirmation
  4. Loading and unloading equipment time billed against site records
  5. Detention at the yard or jobsite carries in and out times from the driver record

Aircraft parts freight invoice audit checklist

Aircraft parts and AOG

5 extra checks. Open the list
  1. Expedite or exclusive-use premium matches the service level agreed at booking
  2. Team driver charges appear only where transit time actually required a team
  3. Dimensional weight calculation checked against the measured dims on the BOL
  4. After-hours pickup and delivery fees carry timestamps
  5. Next-flight-out or counter-to-counter airline fees passed through at cost with the airline receipt

Hazmat freight invoice audit checklist

Placarded loads and hazardous materials

6 extra checks. Open the list
  1. Hazmat surcharge billed at the rate confirmation amount, not the carrier's standard tariff
  2. UN number, hazard class, and packing group on the invoice match the shipping papers
  3. Exclusive-use or segregation charges tie to commodities that actually require them
  4. Route or tunnel restriction mileage supported by the actual routing, not an estimate
  5. Decontamination and trailer wash fees carry the wash ticket
  6. Driver endorsement or security premiums appear only where the rate confirmation includes them

Food-grade freight invoice audit checklist

Food-grade and FSMA-regulated loads

5 extra checks. Open the list
  1. Pre-load washout carries the wash ticket with facility, date, and trailer number
  2. Temperature recorder and monitoring fees match the equipment requested on the rate confirmation
  3. Rejection, return, and disposal charges supported by the receiver's rejection paperwork
  4. Seal replacement fees tie to the seal numbers documented on the BOL
  5. Sanitary transport documentation fees appear only where agreed in writing

Prefer it done for you?

ClearLane runs every one of these checks on every load before payment, as a managed service with a 99 percent accuracy target. Exceptions are logged, short-pays are documented, and rebillable accessorials go back to the shipper instead of quietly absorbing into your margin.

Frequently asked questions

What should a freight invoice audit checklist include?

The core checks: match the invoice to the rate confirmation, verify the fuel surcharge math, confirm every accessorial has documentation (detention with in and out times, lumper receipts, TONU per the rate con), check for duplicates, and confirm remit-to details against the carrier packet. Seven of the 19 also cover fraud, netting and recovery: carrier identity, advances deducted, netting of prior claims and short-pays, the billing window, remit-to verification, approval authority, and flagging rebillable accessorials. The versions above add mode-specific items for LTL, reefer and cold chain, heavy freight, tanker and bulk, cross-border, and drayage and intermodal.

Volume decides. At a few hundred loads a month, a disciplined AP clerk can run every check. Past 1,000 loads a month, deadline pressure wins and errors get approved. That is when a dedicated audit desk, in-house or managed, starts paying for itself.

Start with the universal version. It carries the 19 checks that apply to every carrier invoice regardless of mode. If most of your freight is one type, download that version instead: it contains the same 19 checks plus the ones that only apply to that freight. LTL adds class and weight verification, reefer adds temperature records, heavy freight adds permits and escorts, tanker adds wash and demurrage, cross-border adds customs and tax treatment, and drayage adds chassis, per diem and pre-pull.

Two or more unrecovered exceptions from the same carrier. One exception is an error. A pattern is a billing practice, and it will keep costing you until someone looks at every invoice that carrier has sent. The findings log applies this rule automatically as you record exceptions.

Log what you find. The findings log totals recovery by month and by check, so after a quarter you know which of the 19 checks actually pays on your freight and which are formalities. That is also the number you need if you ever want to justify the time the audit takes.

Seven of the 19 checks are built for it. The MC or DOT on the invoice gets matched to the carrier on the rate confirmation. Remit-to changes get verified by outbound call to a known number, never by replying to the request. Accessorials get checked for approval authority, and open claims and prior short-pays get netted. Identity and remit-to fraud are the two that cost the most, because the freight moved and the money went to the wrong party.